1. Load structure 2. Select parts of the protein 3. Choose database 4. Job status 5. Results 6. Details and pictures

Version 5.0

3D search for functional sites Corporate users, please contact MEDIT SA (francois.delfaud@medit.fr) SuMo Search SuMo Database SuMo Help

SuMo Submission

You can also:

• Load results using results ID or saved results.
• Send a text query if you saved a previous query.

What is SuMo?

SuMo* allows you to screen the Protein Data Bank (PDB) for finding ligand binding sites matching your protein structure or inversely, for finding protein structures matching a given site in your protein. This method is neither based on aminoacid sequence nor on fold comparisons. Priority is given to biological relevance.

SuMo uses its own heuristics for defining ligand binding sites. Automatically selected ligand binding sites are extracted from PDB structure files and stored into SuMo's own database.

Status of this server

This server is free for non-profit users (otherwise contact us) and is provided with no warranty. Since SuMo is a predictive method, care must taken in the interpretation of the results. SuMo does not create experimental data.

Most useful SuMo's tasks are provided and automated by this server, but many SuMo's functionalities are not proposed here: redefinition of chemical groups, parametrization at many levels, multiple comparison... Please contact us if such approaches would be useful to you.

SuMo 5.0-18 IBCP, Lyon, France - Powered by Caml - Supported by the Ministère Français de la Recherche - Send comments to sumo@ibcp.fr - Wednesday March 22 2017 06:43:04 GMT